sultana-study-sports-customers

---
name: workspace-filesystem
description: The virtual filesystem layout of this workspace.
---

# Virtual Filesystem

You work in a terminal over a virtual filesystem. Read files with shell
commands.

Command output comes back whole, however long. Some files here are large,
so point `grep -r`, `rg`, `find` and `cat` at the directory or file you
need rather than at a whole mount.

| path | what it is |
|---|---|
| `/data` | Your files. |
| `/mongodb` | Your MongoDB databases, read-only; change them with the `mongodb` CLI. |
| `/tmp` | Scratch space, in memory. |

## `/mongodb`

```
/mongodb/
  <database>/
    database.json
    collections/
      <collection>/
        schema.json
        documents.jsonl
    views/
      <view>/
        schema.json
        documents.jsonl
```

- `database.json`: `{database: str, collections: list[{name: str}],
  views: list[{name: str}]}`
- `schema.json`: `{database: str, name: str, kind: str, validator: dict |
  null, fields: list[{path: str, presence: number, types: dict}],
  primary_key: str, indexes: list[{name: str, keys: dict, type: str}],
  sampled: int}`, read from a sample of `sampled` documents
- `documents.jsonl`: one document per line, in MongoDB Extended JSON: a date
  reads as `{"$date": "..."}`

/mongodb/
  <database>/
    database.json
    collections/
      <collection>/
        schema.json
        documents.jsonl
    views/
      <view>/
        schema.json
        documents.jsonl

---
name: workspace-commands
description: Use when running commands in this workspace - which commands exist, what they can do, and what the interpreter supports.
---

# Available commands

Python (`python` or `python3`), Perl, JavaScript/Node.js, and TypeScript
runtimes are unavailable. Use the shell commands and task CLIs documented
below; do not probe for or attempt to install other runtimes.

Standard Unix commands, among them:

    cat  head  tail  ls  find  grep  wc  sort  uniq  cut  tr  sed  awk
    diff  tee  xargs  jq

with pipes, `>` redirection and `$(...)` substitution.

Do not probe the machine with `which`, `type`, `--version`, `env`, `ps`,
`echo $PATH`, `ls /usr/bin` or `cat /usr/bin/<command>`: they tell you
nothing about the task.

A filename with a space in it needs quoting, as it would in any shell.

## mongodb

Use `mongodb <command> '<JSON arguments>'`. Run `mongodb <command> --help`
to get more information.

```sh
mongodb list-collections '{"database":"DATABASE"}'
mongodb list-databases '{}'
mongodb collection-indexes '{"database":"DATABASE","collection":"COLLECTION"}'
mongodb collection-schema '{"database":"DATABASE","collection":"COLLECTION"}'
mongodb collection-storage-size '{"database":"DATABASE","collection":"COLLECTION"}'
mongodb count '{"database":"DATABASE","collection":"COLLECTION","query":{"FIELD":"VALUE"}}'
mongodb aggregate '{"database":"DATABASE","collection":"COLLECTION","pipeline":[{"$group":{"_id":"$FIELD","total":{"$sum":1}}}]}'
```

| Command | Arguments | Description |
|---|---|---|
| `mongodb list-collections` | `{database: str}` | List all collections for a given database |
| `mongodb list-databases` | `{}` | List all databases for a MongoDB connection |
| `mongodb collection-indexes` | `{database: str, collection: str}` | Describe the indexes for a collection |
| `mongodb collection-schema` | `{database: str, collection: str}` | Describe the schema for a collection |
| `mongodb collection-storage-size` | `{database: str, collection: str}` | Gets the size of the collection |
| `mongodb count` | `{database: str, collection: str, query?: dict}` | Gets the number of documents in a MongoDB collection using db.collection.count() and query as an optional filter parameter |
| `mongodb aggregate` | `{database: str, collection: str, pipeline: list[dict]}` | Run an aggregation against a MongoDB collection |

## clinicaltrialsgov-mcp-server

Use `clinicaltrialsgov-mcp-server <command> '<JSON arguments>'`. Run
`clinicaltrialsgov-mcp-server <command> --help` to get more information.

```sh
clinicaltrialsgov-mcp-server clinicaltrials-get-study '{"nctIds":"NCT00000000","summaryOnly":true}'
clinicaltrialsgov-mcp-server clinicaltrials-list-studies '{"query":{"cond":"CONDITION"},"pageSize":10}'
```

| Command | Arguments | Description |
|---|---|---|
| `clinicaltrialsgov-mcp-server clinicaltrials-get-study` | `{nctIds: str \| list[str], markupFormat?: "markdown" \| "legacy" = "markdown", fields?: list[str], summaryOnly?: bool = false}` | Fetches one or more clinical studies from ClinicalTrials.gov by their NCT IDs. Returns either complete study data or concise summaries for each. |
| `clinicaltrialsgov-mcp-server clinicaltrials-list-studies` | `{query?: {cond?: str, term?: str, locn?: str, titles?: str, intr?: str, outc?: str, spons?: str, id?: str}, filter?: {ids?: list[str], overallStatus?: list["ACTIVE_NOT_RECRUITING" \| "COMPLETED" \| "ENROLLING_BY_INVITATION" \| "NOT_YET_RECRUITING" \| "RECRUITING" \| "SUSPENDED" \| "TERMINATED" \| "WITHDRAWN" \| "UNKNOWN"], geo?: dict, advanced?: str}, fields?: list[str], sort?: list[str], pageSize?: int = 5, pageToken?: str, countTotal?: bool = true}` | Searches for clinical studies using a combination of query terms and filters. Supports pagination, sorting, and geographic filtering. |

## pubmed

Use `pubmed <command> '<JSON arguments>'`. Run `pubmed <command> --help` to
get more information.

```sh
pubmed search-pubmed-key-words '{"key_words":"QUERY","num_results":5}'
pubmed search-pubmed-advanced '{"term":"QUERY","num_results":5}'
pubmed get-pubmed-article-metadata '{"pmid":"PMID"}'
pubmed download-pubmed-pdf '{"pmid":"PMID"}'
```

| Command | Arguments | Description |
|---|---|---|
| `pubmed search-pubmed-key-words` | `{key_words: str, num_results?: int = 10}` |  |
| `pubmed search-pubmed-advanced` | `{term?: str = null, title?: str = null, author?: str = null, journal?: str = null, start_date?: str = null, end_date?: str = null, num_results?: int = 10}` |  |
| `pubmed get-pubmed-article-metadata` | `{pmid: str \| int}` |  |
| `pubmed download-pubmed-pdf` | `{pmid: str \| int}` |  |

cat  head  tail  ls  find  grep  wc  sort  uniq  cut  tr  sed  awk
diff  tee  xargs  jq

mongodb list-collections '{"database":"DATABASE"}'
mongodb list-databases '{}'
mongodb collection-indexes '{"database":"DATABASE","collection":"COLLECTION"}'
mongodb collection-schema '{"database":"DATABASE","collection":"COLLECTION"}'
mongodb collection-storage-size '{"database":"DATABASE","collection":"COLLECTION"}'
mongodb count '{"database":"DATABASE","collection":"COLLECTION","query":{"FIELD":"VALUE"}}'
mongodb aggregate '{"database":"DATABASE","collection":"COLLECTION","pipeline":[{"$group":{"_id":"$FIELD","total":{"$sum":1}}}]}'

clinicaltrialsgov-mcp-server clinicaltrials-get-study '{"nctIds":"NCT00000000","summaryOnly":true}'
clinicaltrialsgov-mcp-server clinicaltrials-list-studies '{"query":{"cond":"CONDITION"},"pageSize":10}'

pubmed search-pubmed-key-words '{"key_words":"QUERY","num_results":5}'
pubmed search-pubmed-advanced '{"term":"QUERY","num_results":5}'
pubmed get-pubmed-article-metadata '{"pmid":"PMID"}'
pubmed download-pubmed-pdf '{"pmid":"PMID"}'